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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgggcgcgcccgccctgccgtcctgtgcgcgttttgaggtagtagcctgttttgagacttgatttacttccattactggattgcactgcttgctatggacggcagggttcagatactgaggcgagtgctcacatgtgtgccttgccctgacacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO99075
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466983|gb|BP094896.1|BP094896
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|49465674|gb|BP093587.1|BP093587
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTG
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTG
EST: gi|10783876|gb|AV640548.1|AV640548
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|10784787|gb|AV641459.1|AV641459
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|6549790|gb|AV395574.1|AV395574
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTAGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|10786765|gb|AV643437.1|AV643437
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGGAACAAATGCCGAGAAGTTGGCTGCCAACAT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGG-AACAAATGCCGAGAAGTTGGCTGCCAACAT
EST: gi|49467747|gb|BP095608.1|BP095608
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|10791451|gb|AV628817.1|AV628817
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|22051592|gb|BQ809748.1|BQ809748
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|10783639|gb|AV640311.1|AV640311
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|49466656|gb|BP094569.1|BP094569
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|10786863|gb|AV643535.1|AV643535
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|10787434|gb|AV644106.1|AV644106
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|49468331|gb|BP096192.1|BP096192
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTNGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|10784021|gb|AV640693.1|AV640693
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|10785578|gb|AV642250.1|AV642250
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
EST: gi|6550812|gb|AV396596.1|AV396596
EST:     ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTG                         GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT
genomic: ACAATGGTTCTGTTATTTGCATCCCGAACAACGGCCAGTGCTTCTGCTTGgtgagtcggg ... acacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtcgggcgcgcccgccctgccgtcctgtgcgcgttttgaggtagtagcctgttttgagacttgatttacttccattactggattgcactgcttgctatggacggcagggttcagatactgaggcgagtgctcacatgtgtgccttgccctgacacccacagGCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG

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