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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccccacggaagccgtgcagcgctgcctctgtctatttgcgcaccttcgcatctaaaacaagaattcgtgtgttgcaactgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99075
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10783876|gb|AV640548.1|AV640548
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTTCATCATCGAGTATTTCTATGAGTTTGAC
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGAC
EST: gi|10784787|gb|AV641459.1|AV641459
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGAC
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGAC
EST: gi|10786765|gb|AV643437.1|AV643437
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTACATCATCGAGTAT
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTAT
EST: gi|10791451|gb|AV628817.1|AV628817
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGACG
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGACG
EST: gi|10783639|gb|AV640311.1|AV640311
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGACG
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGACG
EST: gi|49466656|gb|BP094569.1|BP094569
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGAC
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTATTTCCATGAGTTTGAC
EST: gi|10793900|gb|AV631266.1|AV631266
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTTCATCATCGAGTATTTCCAT
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTATTTCCAT
EST: gi|10784021|gb|AV640693.1|AV640693
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTTCATCATCGAGTAT
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTAT
EST: gi|6550812|gb|AV396596.1|AV396596
EST:     CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAG                         ATGATCAAGTTCATCATCGAGTATTTCCAT
genomic: CCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccc ... gcaactgcagATGATCAAGTTCATCATCGAGTATTTCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCTGGAAGTCTACTTGCGGCTGGGAGGAGATTTACGTGGCCACGATCGAGgtaaggaccccacggaagccgtgcagcgctgcctctgtctatttgcgcaccttcgcatctaaaacaagaattcgtgtgttgcaactgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT