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CGAGGGCATCAGCGCCGTGCTGTACCCCAACGACTCCACCCCCGAGGGCAAGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAGgtgggtggctgggagggcatgggtgggaaagaatgggtggtgtgcgggcgcggcagggggtgcggccagtcgctcatgcgacgccagggcgcagttctgg...
species | Chlamydomonas reinhardtii |
transcript | EDO98385 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAG GACGTGATGTCGCGCTTCCGCGCTGTGCACGGCGCCAACTGGGAGGCGCTGEST: gi|10793787|gb|AV631153.1|AV631153
genomic: AGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAGgtgggtggct ... ccacctgcagGACGTGATGTCGCGCTTCCGCGCTGTGCACGGCGCCAACTGGGAGGCGCTG
EST: AGGAGCTGCGCCTCAAGCAGCAGTACTTCTTGGTGTGCGCCTCGCTGCAC GACGTGATGTCGAGCTTGCGCGCTGTGCACGGCGCCAACTGGGAGGCGCTGEST: gi|15910615|gb|BI816436.1|BI816436
genomic: AGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAGgtgggtggct ... ccacctgcagGACGTGATGTCGCGCTTCCGCGCTGTGCACGGCGCCAACTGGGAGGCGCTG
EST: AGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAG GACGTGATGTCGCGCTTCCGCGCTGTGCACGGCGCCAACTGGGAGGCGCTGEST: gi|49469811|gb|BP097672.1|BP097672
genomic: AGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAGgtgggtggct ... ccacctgcagGACGTGATGTCGCGCTTCCGCGCTGTGCACGGCGCCAACTGGGAGGCGCTG
EST: AGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAG GACGTGATGTCGCGCTTCCGCGCTGTGCACGGCGCCAACTGGGAGGCGCTG
genomic: AGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAGgtgggtggct ... ccacctgcagGACGTGATGTCGCGCTTCCGCGCTGTGCACGGCGCCAACTGGGAGGCGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGGCATCAGCGCCGTGCTGTACCCCAACGACTCCACCCCCGAGGGCAAGGAGCTGCGCCTCAAGCAGCAGTACTTCTTCGTGTGCGCCTCGCTGCAGgtgggtggctgggagggcatgggtgggaaagaatgggtggtgtgcgggcgcggcagggggtgcggccagtcgctcatgcgacgccagggcgcagttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgcg