1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTGGGACGAGCTGATGAAGGACATTGAGGGCGGCATGTTCGGCGACAAGGACTACTTCAAGCCGCTGGTGGACAGCGTCAACAACATGAAGgcaagcacacggggagcaggccaggcccaggaggacggttaacgaggtggtagacccctaagttgacggcgcacttgccgctttctcataaccccacttt...
species | Chlamydomonas reinhardtii |
transcript | EDO98385 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGGEST: gi|16072431|gb|BI874427.1|BI874427
genomic: GGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGG
EST: GCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGGEST: gi|161823203|gb|FC108203.1|FC108203
genomic: GCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGG
EST: GCACTGAGGCCTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGGEST: gi|10775834|gb|AV632514.1|AV632514
genomic: GCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGG
EST: GCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGGEST: gi|161813242|gb|FC101437.1|FC101437
genomic: GCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGG
EST: GGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGGEST: gi|161794546|gb|FC081954.1|FC081954
genomic: GGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGG
EST: GCACTGAGGCCTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGGEST: gi|239840759|gb|GR282449.1|GR282449
genomic: GCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGG
EST: GCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGGEST: gi|239840760|gb|GR282450.1|GR282450
genomic: GCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCTGATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGG
EST: GCGACAAGGACTACTTCAAGCCGCTGGTGGACAGCGTCAACAACATGAAG GTGGGCAACGACTGGTTCCTGCTGGCCAACGACTTCGCCGGCTACCTGGCG
genomic: GCGACAAGGACTACTTCAAGCCGCTGGTGGACAGCGTCAACAACATGAAGgcaagcacac ... taccgagcagGTGGGCAACGACTGGTTCCTGCTGGCCAACGACTTCGCCGGCTACCTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGACGAGCTGATGAAGGACATTGAGGGCGGCATGTTCGGCGACAAGGACTACTTCAAGCCGCTGGTGGACAGCGTCAACAACATGAAGgcaagcacacggggagcaggccaggcccaggaggacggttaacgaggtggtagacccctaagttgacggcgcacttgccgctttctcataaccccacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccca