1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gatagtgcatggtatgtccgcgcatccactgcacacaccgccacaccctgaccctgcgttcgccctcaccgccccctcctccccctgtccttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCATTCGCGAGTACGCTGAGGACATCTGGCACGTGAAGCCCGCTCGCCCCTCC
species | Chlamydomonas reinhardtii |
transcript | EDO98385 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCG GTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGAEST: gi|161823203|gb|FC108203.1|FC108203
genomic: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCGgtgggtggga ... ttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGA
EST: CAGGAGGAGGTGGACGCTACCTACAAGGACCAGGCGGAGTGGCTGCGCCG GTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGCGACCGCACCATEST: gi|10775834|gb|AV632514.1|AV632514
genomic: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCGgtgggtggga ... ttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCAT
EST: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCG GTCGATCATGTACACEST: gi|161813242|gb|FC101437.1|FC101437
genomic: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCGgtgggtggga ... ttgtgcgcagGTCGATCATGTACAC
EST: CAGGAGGAGGTGGACGCTACCTACAAGGACCAGGCGGAGTGGCTGCGCCG GTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGCGACCGCACCATEST: gi|161794546|gb|FC081954.1|FC081954
genomic: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCGgtgggtggga ... ttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCAT
EST: CAGGAGGAGGTGGACGCTACCTACAAGGACCAGGCGGAGTGGCTGCGCCG GTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGCGACCGCACCATEST: gi|239840759|gb|GR282449.1|GR282449
genomic: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCGgtgggtggga ... ttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCAT
EST: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCG GTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCATEST: gi|239840760|gb|GR282450.1|GR282450
genomic: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCGgtgggtggga ... ttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCAT
EST: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCG GTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCAT
genomic: CAGGAGGAGGTGGACGCCACCTACAAGGACCAGGCGGAGTGGCTGCGCCGgtgggtggga ... ttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCAT
ccctgaccctgcgttcgccctcaccgccccctcctccccctgtccttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCATTCGCGAGTACGCTGAGGACATCTGGCACGTGAAGCCCGCTCGCCCCTCC
ccctcac putative branch site (score: 3)
cgttcgccctcaccgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagtgcatggtatgtccgcgcatccactgcacacaccgccacaccctgaccctgcgttcgccctcaccgccccctcctccccctgtccttgtgcgcagGTCGATCATGTACACGGCCGGCAGCGGCAAGTTCTCCAGTGACCGCACCATTCGCGAGTACGCTGAGGACATCTGGCACGTGAAGCCCGCTCGCCCCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - -tggtatg
- - - - - - - - - - - -atccact
- - - - - - - - - - - - - - - gcacaca
- - - - - - - - - - - - - - - - - - - - -cacaccc