1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CCTGGGCCGCCTGGCCGCCTGCTTCCTGGACTCGATGGCCACTCTGGACCTGCCGGGCTGGGGCTACGGCATCCGCTACAAGTACGGCATGTTCAAGCAGgtccgtgggagtaacgcttgcggtacctggattggggctgtcagaccgtgccgcagtccgcacgggatgtagaaacggagggtcttgctatcaaaacaca...
species | Chlamydomonas reinhardtii |
transcript | EDO98385 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGGCATCCGCTACAAGTACGGCATGTTCAAGCAG GGCCTGAAGGACGGCTACCAGGTTGAGATGCCCGACATTTGGCTGACCAAGEST: gi|239840758|gb|GR282448.1|GR282448
genomic: ACGGCATCCGCTACAAGTACGGCATGTTCAAGCAGgtccgtggga ... acccccacagGGCCTGAAGGACGGCTACCAGGTTGAGATGCCCGACATTTGGCTGACCAAG
EST: TGCCGGGCTGGGGCTACGGCATCCGCTACAAGTACGGCATGGTCAAGCAN GGCCTGAAGGACGGCTACCAGGTTGAGATGCCCGACATTTGGCTGAACAAG
genomic: TGCCGGGCTGGGGCTACGGCATCCGCTACAAGTACGGCATGTTCAAGCAGgtccgtggga ... acccccacagGGCCTGAAGGACGGCTACCAGGTTGAGATGCCCGACATTTGGCTGACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGGGCCGCCTGGCCGCCTGCTTCCTGGACTCGATGGCCACTCTGGACCTGCCGGGCTGGGGCTACGGCATCCGCTACAAGTACGGCATGTTCAAGCAGgtccgtgggagtaacgcttgcggtacctggattggggctgtcagaccgtgccgcagtccgcacgggatgtagaaacggagggtcttgctatcaaaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacac