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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTGAAGGACGGCTACCAGGTTGAGATGCCCGACATTTGGCTGACCAAGGGTAACCCCTGGGAGGTCCGCCGCGACGACGTCAAGTTCGAGgtgcgggcggcggcaggcgttcgggggaggggctggatgtggcaagtgcggcggtggttaaggttttgaagcggagcactaccatggcaacgctgggctgcatacgcgccttcaccatgggcggttaggctggtgcgtgacctgtcgagtcacctgctgttgccgtacccggactggcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98385
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16433809|gb|BI999035.1|BI999035
EST:     TGACCAAGGGTAACCCCTGGGAGGTCCGCCGCGACGACGTCAAGTTCGAG                         GTGGGCTTCGGCGGCCGCGTGGAGCGCAAGAAGGTGAACGGCAAGGAGATG
genomic: TGACCAAGGGTAACCCCTGGGAGGTCCGCCGCGACGACGTCAAGTTCGAGgtgcgggcgg ... actggcgcagGTGGGCTTCGGCGGCCGCGTGGAGCGCAAGAAGGTGAACGGCAAGGAGATG
EST: gi|239840758|gb|GR282448.1|GR282448
EST:     TGAACAAGG-TAACCCCTGGGAGGTCCGCCGCGACGACGTCAAGTTCGAG                         GTGGGGCT-CGGCGGCC-CGTGGAGCGCAAGAAGGGGAACGGCAAGGAAAT
genomic: TGACCAAGGGTAACCCCTGGGAGGTCCGCCGCGACGACGTCAAGTTCGAGgtgcgggcgg ... actggcgcagGTGGG-CTTCGGCGGCCGCGTGGAGCGCAAGAAGGTGAACGGCAAGGAGAT