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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcaggcgcagggacgagagggacattgggaggtctgcctacgtgttttgcttgcaaagcgttgtggcatgggtagtgtcaccggtgtgccatgcatgctcatcattgcttgctggctatgcacaaggggcttgcagggaagcttgcgcacagcgcccgacgactttcccccatccacgtgctgccactgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97256
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161790761|gb|FC081739.1|FC081739
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161790041|gb|FC076820.1|FC076820
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161801317|gb|FC088476.1|FC088476
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161806843|gb|FC090144.1|FC090144
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161808797|gb|FC097934.1|FC097934
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161805608|gb|FC090664.1|FC090664
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|34990379|gb|CF564296.1|CF564296
EST:     AGTCGGACAGCTTTTACTTTGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTTCGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161821378|gb|FC107346.1|FC107346
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161809128|gb|FC095158.1|FC095158
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161806803|gb|FC090143.1|FC090143
EST:     AGTCGGACAGCTTCTATTTGGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161815387|gb|FC100995.1|FC100995
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|22048531|gb|BQ808252.1|BQ808252
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|22072778|gb|BQ822116.1|BQ822116
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCNGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|14242140|gb|BG860956.1|BG860956
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|22072777|gb|BQ822115.1|BQ822115
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161806010|gb|FC089532.1|FC089532
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161814224|gb|FC103693.1|FC103693
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161817425|gb|FC100832.1|FC100832
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|7709463|gb|AW772881.1|AW772881
EST:     CAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: CAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161818020|gb|FC102233.1|FC102233
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|8828129|gb|BE211971.1|BE211971
EST:     AGTCGGACAGCTTTTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161790042|gb|FC076821.1|FC076821
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161814223|gb|FC103692.1|FC103692
EST:     TGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: TGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|22048534|gb|BQ808253.1|BQ808253
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161812112|gb|FC098291.1|FC098291
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161808796|gb|FC097933.1|FC097933
EST:     TTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: TTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|14242141|gb|BG860957.1|BG860957
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
EST: gi|161805580|gb|FC090636.1|FC090636
EST:     AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG                         GCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT
genomic: AGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcag ... gccactgcagGCTGAGTACCAGTACGTGCAGGATTAAGCGGCGCTGATCCATGCGGAGTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAGgtgggcgcaggcgcagggacgagagggacattgggaggtctgcctacgtgttttgcttgcaaagcgttgtggcatgggtagtgtcaccggtgtgccatgcatgctcatcattgcttgctggctatgcacaaggggcttgcagggaagcttgcgcacagcgcccgacgactttcccccatccacgtgctgccactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA