1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgccggccgcccagctcagagcgctcagcgtatgtacaacgcctagcgattccgtcataacttcgacaattgctgcattctatctcttcgggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACAGCACCAACTCGTGGGAGGCCATCTACGATGTGCCCGAGTACCCCGCCG
species | Chlamydomonas reinhardtii |
transcript | EDO97256 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161801317|gb|FC088476.1|FC088476
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161806843|gb|FC090144.1|FC090144
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161808797|gb|FC097934.1|FC097934
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|15695858|gb|BI720163.1|BI720163
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|10770445|gb|AV621270.1|AV621270
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161805608|gb|FC090664.1|FC090664
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161809128|gb|FC095158.1|FC095158
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161815387|gb|FC100995.1|FC100995
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|22072778|gb|BQ822116.1|BQ822116
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161806010|gb|FC089532.1|FC089532
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161814224|gb|FC103693.1|FC103693
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161817425|gb|FC100832.1|FC100832
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161818020|gb|FC102233.1|FC102233
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161790042|gb|FC076821.1|FC076821
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|22048539|gb|BQ808254.1|BQ808254
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGNCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|22048534|gb|BQ808253.1|BQ808253
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161812112|gb|FC098291.1|FC098291
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|14242141|gb|BG860957.1|BG860957
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|10777286|gb|AV633966.1|AV633966
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|34990381|gb|CF564298.1|CF564298
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|10770240|gb|AV621065.1|AV621065
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACEST: gi|161805580|gb|FC090636.1|FC090636
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
gcgattccgtcataacttcgacaattgctgcattctatctcttcgggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACAGCACCAACTCGTGGGAGGCCATCTACGATGTGCCCGAGTACCCCGCCG
tcataac putative branch site (score: 2)
ataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccggccgcccagctcagagcgctcagcgtatgtacaacgcctagcgattccgtcataacttcgacaattgctgcattctatctcttcgggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAACAGCACCAACTCGTGGGAGGCCATCTACGATGTGCCCGAGTACCCCGCCG
- - - - - - -gctcaga
- - - - - - - - - - - - - - - -atgtaca
- - - - - - - - - - - - - - - - - - - acgccta