Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaccagaatttgccaccgcatgccctcgcaacgccagcgcggtgcgtgttgcggatcattaaggtcttccggtgctggactggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT

Basic information

species Chlamydomonas reinhardtii
transcript EDO97256
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161790761|gb|FC081739.1|FC081739
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161801317|gb|FC088476.1|FC088476
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161806843|gb|FC090144.1|FC090144
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161808797|gb|FC097934.1|FC097934
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|15695858|gb|BI720163.1|BI720163
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|10770445|gb|AV621270.1|AV621270
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161805608|gb|FC090664.1|FC090664
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161809128|gb|FC095158.1|FC095158
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161815387|gb|FC100995.1|FC100995
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|22072778|gb|BQ822116.1|BQ822116
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161806010|gb|FC089532.1|FC089532
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161814224|gb|FC103693.1|FC103693
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161817425|gb|FC100832.1|FC100832
EST:     CGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: CGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|10127547|gb|BE726251.1|BE726251
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161818020|gb|FC102233.1|FC102233
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161790042|gb|FC076821.1|FC076821
EST:     CGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: CGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|22048539|gb|BQ808254.1|BQ808254
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|22048534|gb|BQ808253.1|BQ808253
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161812112|gb|FC098291.1|FC098291
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|10777286|gb|AV633966.1|AV633966
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|34990381|gb|CF564298.1|CF564298
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|10770240|gb|AV621065.1|AV621065
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
EST: gi|161805580|gb|FC090636.1|FC090636
EST:     GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG                         AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC
genomic: GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAGgtaacaccag ... ggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcggtgcgtgttgcggatcattaaggtcttccggtgctggactggtttcgcagAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT
                  atcattaa  TA-rich tract