Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcggtcttacgatgcgaactcggggcacttggacaggcgcttgcggccgtgttgcagcggggagagaaagggatgcgaggggaaagcgtgagc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97256
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161790761|gb|FC081739.1|FC081739
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161801317|gb|FC088476.1|FC088476
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161806843|gb|FC090144.1|FC090144
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161808797|gb|FC097934.1|FC097934
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|15695858|gb|BI720163.1|BI720163
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|10770445|gb|AV621270.1|AV621270
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161805608|gb|FC090664.1|FC090664
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161809128|gb|FC095158.1|FC095158
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161815387|gb|FC100995.1|FC100995
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|22072778|gb|BQ822116.1|BQ822116
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161806010|gb|FC089532.1|FC089532
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161814224|gb|FC103693.1|FC103693
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161817425|gb|FC100832.1|FC100832
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161818020|gb|FC102233.1|FC102233
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161790042|gb|FC076821.1|FC076821
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|22048539|gb|BQ808254.1|BQ808254
EST:     GGCCACAGCCGGNCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|22048534|gb|BQ808253.1|BQ808253
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161812112|gb|FC098291.1|FC098291
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|14242141|gb|BG860957.1|BG860957
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|10777286|gb|AV633966.1|AV633966
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|34990381|gb|CF564298.1|CF564298
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|10770240|gb|AV621065.1|AV621065
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
EST: gi|161805580|gb|FC090636.1|FC090636
EST:     GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAG                         GACAAGCTCGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC
genomic: GGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcg ... ggacacgcagGACAAGCTGGTCCGCACGTACGACTTCGAGTTCGGCTTCTGCATCCCCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGAGCGGCACTTCTTCAAGgtaagcagcggtcttacgatgcgaactcggggcacttggacaggcgcttgcggccgtgttgcagcggggagagaaagggatgcgaggggaaagcgtgagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccgtgt