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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgggtttgcgcggttgtatttgagaccgcctggctattccatttcactcatctttggacggaatttggatgggcctatgctgttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97256
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161790761|gb|FC081739.1|FC081739
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161801317|gb|FC088476.1|FC088476
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161806843|gb|FC090144.1|FC090144
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161808797|gb|FC097934.1|FC097934
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|15695858|gb|BI720163.1|BI720163
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|10770445|gb|AV621270.1|AV621270
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161805608|gb|FC090664.1|FC090664
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161809128|gb|FC095158.1|FC095158
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161815387|gb|FC100995.1|FC100995
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|22072778|gb|BQ822116.1|BQ822116
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161806010|gb|FC089532.1|FC089532
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161814224|gb|FC103693.1|FC103693
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161817425|gb|FC100832.1|FC100832
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|10127547|gb|BE726251.1|BE726251
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161818020|gb|FC102233.1|FC102233
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161790042|gb|FC076821.1|FC076821
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|22048539|gb|BQ808254.1|BQ808254
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGNCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|22048534|gb|BQ808253.1|BQ808253
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161812112|gb|FC098291.1|FC098291
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|14242141|gb|BG860957.1|BG860957
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|10777286|gb|AV633966.1|AV633966
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|34990381|gb|CF564298.1|CF564298
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|10770240|gb|AV621065.1|AV621065
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
EST: gi|161805580|gb|FC090636.1|FC090636
EST:     AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCT                         GCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA
genomic: AAGTACACATTTCCTGCGTCATTCCTCAAGTTCAAGACCGTGCGGACGCTgtaagttcgg ... gctgttgcagGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCTGCGCATGATTGA