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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgggggacttgcacaacctagttcaccagcaaccaatatctggtcttgtgatgcacttctgggactgcgacttgatgtgtgaaacttgagaagccgcaagcactcggtcaacaaaccacgttggccgcccacccagtcacacgcgctggctgcaatgttccatggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97256
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161790761|gb|FC081739.1|FC081739
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161790041|gb|FC076820.1|FC076820
EST:     ATGTGCCCGAGTACCCCGCTGGCGTCATCAAAGATTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: ATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161801317|gb|FC088476.1|FC088476
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161806843|gb|FC090144.1|FC090144
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161808797|gb|FC097934.1|FC097934
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|15695858|gb|BI720163.1|BI720163
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161805608|gb|FC090664.1|FC090664
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161821378|gb|FC107346.1|FC107346
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161809128|gb|FC095158.1|FC095158
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161806803|gb|FC090143.1|FC090143
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTATTTGGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161815387|gb|FC100995.1|FC100995
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|22072778|gb|BQ822116.1|BQ822116
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|14242140|gb|BG860956.1|BG860956
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAA
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTA-Tgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAA
EST: gi|22072777|gb|BQ822115.1|BQ822115
EST:     GGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: GGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161806010|gb|FC089532.1|FC089532
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161814224|gb|FC103693.1|FC103693
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161817425|gb|FC100832.1|FC100832
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161818020|gb|FC102233.1|FC102233
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|8828129|gb|BE211971.1|BE211971
EST:     GATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTTTACTTCGTGGACAAC
genomic: GATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161790042|gb|FC076821.1|FC076821
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|22048534|gb|BQ808253.1|BQ808253
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161812112|gb|FC098291.1|FC098291
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|14242141|gb|BG860957.1|BG860957
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
EST: gi|161805580|gb|FC090636.1|FC090636
EST:     AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTAT                         GTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC
genomic: AGGCCATCTACGATGTGCCCGAGTACCCCGCCGGCGTCATCAACGACTATgtaagcgggg ... ggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcgggggacttgcacaacctagttcaccagcaaccaatatctggtcttgtgatgcacttctgggactgcgacttgatgtgtgaaacttgagaagccgcaagcactcggtcaacaaaccacgttggccgcccacccagtcacacgcgctggctgcaatgttccatggccgcacagGTCACCTCGCCGTGGGCGCACAAGTCGGACAGCTTCTACTTCGTGGACAACAAGCTCATCATGCACAACAAG

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