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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACCTGTGTCCCCTGAACGCGAACACCTTCGGGATAGAGTTCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctccgcaagcgacaatgtggccgggacatgcctacctgaccacttcccgagctgccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97256
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161790761|gb|FC081739.1|FC081739
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161801317|gb|FC088476.1|FC088476
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161806843|gb|FC090144.1|FC090144
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161808797|gb|FC097934.1|FC097934
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|15695858|gb|BI720163.1|BI720163
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|10770445|gb|AV621270.1|AV621270
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161805608|gb|FC090664.1|FC090664
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161809128|gb|FC095158.1|FC095158
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161815387|gb|FC100995.1|FC100995
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|22072778|gb|BQ822116.1|BQ822116
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161806010|gb|FC089532.1|FC089532
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161814224|gb|FC103693.1|FC103693
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|10127547|gb|BE726251.1|BE726251
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161818020|gb|FC102233.1|FC102233
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|22048539|gb|BQ808254.1|BQ808254
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|22048534|gb|BQ808253.1|BQ808253
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161812112|gb|FC098291.1|FC098291
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|10777286|gb|AV633966.1|AV633966
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|34990381|gb|CF564298.1|CF564298
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|10770240|gb|AV621065.1|AV621065
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
EST: gi|161805580|gb|FC090636.1|FC090636
EST:     TCCTGAAGTTCGAGATCAAGGAGTATGATACCAACACCGTCGTGTACCAG                         GTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG
genomic: TCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctc ... gctgccacagGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGACCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTACCTGTGTCCCCTGAACGCGAACACCTTCGGGATAGAGTTCCTGAAGTTCGAGATCAAGGAGTATGACACCAACACCGTCGTGTACCAGgtgcgggctccgcaagcgacaatgtggccgggacatgcctacctgaccacttcccgagctgccacag

- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG