1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAGgttcgtggtgttgtgtggggtgctgtgtgtgtgtgtgggtggggggggggggtaaacgaggttaaggcagtgcaaacagggtaagagcaacgggaacagc...
species | Chlamydomonas reinhardtii |
transcript | EDO97224 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAG ATCATTGGCGAGATCTCGGTGGCGGGCGCCACCTACAAGGCCATGGAGTTCEST: gi|49464141|gb|BP092054.1|BP092054
genomic: TGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAGgttcgtggtg ... cccaccccagATCATTGGCGAGATCTCGGTGGCGGGCGCCACCTACAAGGCCATGGAGTTC
EST: TGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAG ATCATTGGCGAGATCTCGGTGGCGGGCGCCACCTACAAGGCCATGGAGTTCEST: gi|10792828|gb|AV630194.1|AV630194
genomic: TGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAGgttcgtggtg ... cccaccccagATCATTGGCGAGATCTCGGTGGCGGGCGCCACCTACAAGGCCATGGAGTTC
EST: TGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAG ATCATTGGCGAGATCTCGGTGGCGGGCGCCACCTACAAGGCCATGGAGTTC
genomic: TGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAGgttcgtggtg ... cccaccccagATCATTGGCGAGATCTCGGTGGCGGGCGCCACCTACAAGGCCATGGAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAGgttcgtggtgttgtgtggggtgctgtgtgtgtgtgtgggtggggggggggggtaaacgaggttaaggcagtgcaaacagggtaagagcaacgggaacagc
- - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaca