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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtttatctttaacttactgtagctgcaagtagaaaggcggtgatcgatgcttagcactgatgtctgtgttttcttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97224
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692279|gb|BI716584.1|BI716584
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10792360|gb|AV629726.1|AV629726
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|49469780|gb|BP097641.1|BP097641
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|23362962|gb|BU650782.1|BU650782
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|22052116|gb|BQ810057.1|BQ810057
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|14234198|gb|BG853014.1|BG853014
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10790464|gb|AV627830.1|AV627830
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|23364909|gb|BU652729.1|BU652729
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|15692663|gb|BI716968.1|BI716968
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10768578|gb|AV619403.1|AV619403
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10789029|gb|AV626749.1|AV626749
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|22076842|gb|BQ825618.1|BQ825618
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10793155|gb|AV630521.1|AV630521
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|8401055|gb|BE056689.1|BE056689
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|15372062|gb|BI531488.1|BI531488
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|15370570|gb|BI529996.1|BI529996
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagaaaggcggtgatcgatgcttagcactgatgtctgtgttttcttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG
                          cactgat  putative branch site (score: 3)
                                  tctgtgttttcttct  CT-rich tract
                                        ttttctt  TA-rich tract