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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATCTCAAACCCAACGTGACCGAACACACACACCAACCTTCTTTTTCTTTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgtttatctttaacttactgtagctgcaagtagaaaggcggtgatcgatgcttagcactgatgtctgtgttttcttctgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97224
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692279|gb|BI716584.1|BI716584
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10792360|gb|AV629726.1|AV629726
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|49469780|gb|BP097641.1|BP097641
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|23362962|gb|BU650782.1|BU650782
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|22052116|gb|BQ810057.1|BQ810057
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|14234198|gb|BG853014.1|BG853014
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10790464|gb|AV627830.1|AV627830
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|23364909|gb|BU652729.1|BU652729
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|15692663|gb|BI716968.1|BI716968
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10768578|gb|AV619403.1|AV619403
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10789029|gb|AV626749.1|AV626749
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|22076842|gb|BQ825618.1|BQ825618
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|10793155|gb|AV630521.1|AV630521
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|8401055|gb|BE056689.1|BE056689
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|15372062|gb|BI531488.1|BI531488
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
EST: gi|15370570|gb|BI529996.1|BI529996
EST:     TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTT                         GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG
genomic: TTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgttt ... ttctgtgcagGCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCATCTCAAACCCAACGTGACCGAACACACACACCAACCTTCTTTTTCTTTTACGCCGCTGAGCAACAATGTCTCTGCAGGCCACCATGAACGCGCCTTgtgagtgtttatctttaacttactgtagctgcaagtagaaaggcggtgatcgatgcttagcactgatgtctgtgttttcttctgtgcag

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