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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcggcggccggggacttcgtgggcatgcccccaggccacgttgtgcagcttcctggcctccgtggacgcgggaattcatctgaaacttcattgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97224
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692279|gb|BI716584.1|BI716584
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|10792360|gb|AV629726.1|AV629726
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|49469780|gb|BP097641.1|BP097641
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|23362962|gb|BU650782.1|BU650782
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|22052116|gb|BQ810057.1|BQ810057
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|14234198|gb|BG853014.1|BG853014
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|10790464|gb|AV627830.1|AV627830
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|23364909|gb|BU652729.1|BU652729
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|15692663|gb|BI716968.1|BI716968
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|10768578|gb|AV619403.1|AV619403
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|22076842|gb|BQ825618.1|BQ825618
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|10793155|gb|AV630521.1|AV630521
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|8401055|gb|BE056689.1|BE056689
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|15372062|gb|BI531488.1|BI531488
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
EST: gi|15370570|gb|BI529996.1|BI529996
EST:     CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCG                         GTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC
genomic: CCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcgg ... cctcccgcagGTTAAGCGTGCGATGACCATGACCGAGAAGATCCTGGCGAACCACTCGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCGACGGGCCGTGTTGCCCGCCGCTCCGTCAAGGTTTCGGCCATCTCTGCTCCCCCGACGCCCGCGCGTGCCCCCTCGTCGACCGGCTCGgtgggtgcggcggccggggacttcgtgggcatgcccccaggccacgttgtgcagcttcctggcctccgtggacgcgggaattcatctgaaacttcattgt

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