1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...nnnnnnnnnnnnncagggctgaacaacgcgtgtttcgatgcctcacgggacgcacccgttctcctctcctcacagccgcctctcccccacccacgcgcagGTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDO97224 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACACCGACGCCGGCTTCATCCTGGGCACCGGCAAGCTGCTGATCANAG GTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTEST: gi|49464141|gb|BP092054.1|BP092054
genomic: CAACACCGACGCCGGCTTCATCCTGGGCACCGGCAAGCTGCTGATCA-AGgtgagggtgt ... ccacgcgcagGTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCT
EST: GCAACACCGACGCCGGC-TCATCCTGGGCACCGGCAAGCTGCTGATCAAG GTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTGEST: gi|10792828|gb|AV630194.1|AV630194
genomic: GCAACACCGACGCCGGCTTCATCCTGGGCACCGGCAAGCTGCTGATCAAGgtgagggtgt ... ccacgcgcagGTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTG
EST: GCAACACCGACGCCGGCTTCATCCTGGGCACCGGCAAGCTGCTGATCAAG GTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTG
genomic: GCAACACCGACGCCGGCTTCATCCTGGGCACCGGCAAGCTGCTGATCAAGgtgagggtgt ... ccacgcgcagGTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTG
cgggacgcacccgttctcctctcctcacagccgcctctcccccacccacgcgcagGTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAG
tcctcac putative branch site (score: 2)
ttctcctctcctcaca CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| nnnnnnnnnnnnncagggctgaacaacgcgtgtttcgatgcctcacgggacgcacccgttctcctctcctcacagccgcctctcccccacccacgcgcagGTTCCCCCGACCATGCGCTTCATCATGGACGGCGAGATGCCCGAGTACCTGCTGGCCAAGGACCTCATCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - cgtgttt
- - - - - - - - - - - - - - - - - - - - - - - -ggacgca