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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacctcttccgcggtgcagcccgcgttcccctaccgctcacccacacgccccatgagcaattccgcgaccgcccctgcccactgaaacacgcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCGCTCCAACTTCAAGGCCAACCCGGACTACAAGGGCGTGTGCCACGTGGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97224
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692279|gb|BI716584.1|BI716584
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
EST: gi|10792360|gb|AV629726.1|AV629726
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGA
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGA
EST: gi|23362962|gb|BU650782.1|BU650782
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
EST: gi|22052116|gb|BQ810057.1|BQ810057
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
EST: gi|14234198|gb|BG853014.1|BG853014
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
EST: gi|10790464|gb|AV627830.1|AV627830
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACG
EST: gi|23364909|gb|BU652729.1|BU652729
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
EST: gi|15692663|gb|BI716968.1|BI716968
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
EST: gi|10768578|gb|AV619403.1|AV619403
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACA
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACA
EST: gi|22076842|gb|BQ825618.1|BQ825618
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
EST: gi|10793155|gb|AV630521.1|AV630521
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACG
EST: gi|8401055|gb|BE056689.1|BE056689
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
EST: gi|15372062|gb|BI531488.1|BI531488
EST:     TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCG                         TGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG
genomic: TACATCTTCACCTCGGACGCCCGCGCCAACCGCAACGTGGACATCCTGCGgtgagcgcag ... gcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacctcttccgcggtgcagcccgcgttcccctaccgctcacccacacgccccatgagcaattccgcgaccgcccctgcccactgaaacacgcgcgcgcagTGAGGTGGCCGGCAAGTACAACATCAAGTACTTTTACGACATCACTGACCGCTCCAACTTCAAGGCCAACCCGGACTACAAGGGCGTGTGCCACGTGGCG

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