1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTTGGGGCGTGGAGGCGCGCGTGCCGTTCCTGGACCGCCACTTCCTGGACGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGGgtgggtgcccatggtggcggggcgtagctgcagcgcgcgtcgcgggctcagaccctttgcgggtccacgggttgaggatggtgggcagggaaggtggggcgagggagggagcgcgctgaagggtgtgagacgtgggactgacctgattggccggcctctgctgtccctgcag
species | Chlamydomonas reinhardtii |
transcript | EDO97202 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGG GCCGCATCGAGAAGTACATCCTCCGGAAAGCGTTCGACACCCCCGAGEST: gi|9210297|gb|BE337212.1|BE337212
genomic: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGGgtgggtgccc ... gtccctgcagGCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAG
EST: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGG GCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAGEST: gi|15698263|gb|BI722568.1|BI722568
genomic: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGGgtgggtgccc ... gtccctgcagGCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAG
EST: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGG GCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAGEST: gi|161814299|gb|FC102065.1|FC102065
genomic: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGGgtgggtgccc ... gtccctgcagGCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAG
EST: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGG GCCGCATCGAGAAGTACATCCTCCGGAAAGCGTTCGACACCCCCGAGEST: gi|161800664|gb|FC085600.1|FC085600
genomic: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGGgtgggtgccc ... gtccctgcagGCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAG
EST: GATGATTGACAAGAGCAAGG GCCGCATCGAGAAGTACATCCTCCGGAAAGCGTTCGACACCCCCGAGEST: gi|16430040|gb|BI995266.1|BI995266
genomic: GATGATTGACAAGAGCAAGGgtgggtgccc ... gtccctgcagGCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAG
EST: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGG GCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAG
genomic: CGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGGgtgggtgccc ... gtccctgcagGCCGCATCGAGAAGTACATCCTCCGGAAAGCCTTCGATACCCCCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGGGGCGTGGAGGCGCGCGTGCCGTTCCTGGACCGCCACTTCCTGGACGTGGCCATGGAGATCGACCCCGCCGAGAAGATGATTGACAAGAGCAAGGgtgggtgcccatggtggcggggcgtagctgcagcgcgcgtcgcgggctcagaccctttgcgggtccacgggttgaggatggtgggcagggaaggtggggcgagggagggagcgcgctgaagggtgtgagacgtgggactgacctgattggccggcctctgctgtccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG