1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagcgtttcgcgcacaccgtatgcagtaagactttgctcgtgctgtgcttcgtgtgccatgtgcgctgacattgaactatgccgcgtgtgcgctgacaattcactctgccgcgttgctcgcagGCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAGCTGAGACTAGCTGTCAGAGGTTGCTGCGCATGGGGCCGCGGCGTGCGTC
species | Chlamydomonas reinhardtii |
transcript | EDO97202 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CGGCCTACGACGCCGCCGCCGCCGCCAACGGCGAGCCGGCTGCCAAGAAG GCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAGEST: gi|161796812|gb|FC084546.1|FC084546
genomic: CGGCCTACGACGCCGCCGCCGCCGCCAACGGCGAGCCGGCTGCCAAGAAGgtgagcgttt ... ttgctcgcagGCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAG
EST: CGGCCTACGACGCCGCCGCCGCCGCCAACGGCGAGCCGGCTGCCAAGAAG GCCAAGAAGTAAAGGGGCCTTGTCCACCACTTGCGGCCCCGACTGCGGCAGEST: gi|15698263|gb|BI722568.1|BI722568
genomic: CGGCCTACGACGCCGCCGCCGCCGCCAACGGCGAGCCGGCTGCCAAGAAGgtgagcgttt ... ttgctcgcagGCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAG
EST: CGGCCTACGACGCCGCCGCCGCCGCCAACGGCGAGCCGGCTGCCAAGAAG GCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAGEST: gi|161800664|gb|FC085600.1|FC085600
genomic: CGGCCTACGACGCCGCCGCCGCCGCCAACGGCGAGCCGGCTGCCAAGAAGgtgagcgttt ... ttgctcgcagGCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAG
EST: CGGCCTACGACGCCGCCGCCGCCGCCAACGGCGAGCCGGCTGCCAAGAAG GCCAAGAAGTAAAGGGGCCTTGTCCACCACTTGCGGCCCCGACTGCGGCAG
genomic: CGGCCTACGACGCCGCCGCCGCCGCCAACGGCGAGCCGGCTGCCAAGAAGgtgagcgttt ... ttgctcgcagGCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAG
acattgaactatgccgcgtgtgcgctgacaattcactctgccgcgttgctcgcagGCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAGCTGAGACTAGCTGTCAGAGGTTGCTGCGCATGGGGCCGCGGCGTGCGTC
cgctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgtttcgcgcacaccgtatgcagtaagactttgctcgtgctgtgcttcgtgtgccatgtgcgctgacattgaactatgccgcgtgtgcgctgacaattcactctgccgcgttgctcgcagGCCAAGAAGTAAACGGGCCTTGTCCACCACTTGCGGTCCCGACTGCGGCAGCTGAGACTAGCTGTCAGAGGTTGCTGCGCATGGGGCCGCGGCGTGCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC