1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tcctccattctgtggttggcaccagctccgcacagagttgcaccgcagcgctctcttgaccccagctagcacctgcaccccatcgtcccgccccccgcagGATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCCAAGACGGGTGAGTTCACCCGCTACTACAACCCCAAGTACTTCCTGGACT
species | Chlamydomonas reinhardtii |
transcript | EDO97202 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAG GATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAEST: gi|22063923|gb|BQ815506.1|BQ815506
genomic: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAGgtgcgcatgc ... ccccccgcagGATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACA
EST: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAG GATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCCEST: gi|16432675|gb|BI997901.1|BI997901
genomic: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAGgtgcgcatgc ... ccccccgcagGATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCC
EST: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAG GATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCCEST: gi|15696568|gb|BI720873.1|BI720873
genomic: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAGgtgcgcatgc ... ccccccgcagGATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCC
EST: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAG GATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCCEST: gi|16072104|gb|BI874100.1|BI874100
genomic: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAGgtgcgcatgc ... ccccccgcagGATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCC
EST: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAG GATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCC
genomic: GGGGCCGTGACGGCAGCGTGTGGCTGTCGAGCGAGATGAAGTGCCTGAAGgtgcgcatgc ... ccccccgcagGATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCC
cagcgctctcttgaccccagctagcacctgcaccccatcgtcccgccccccgcagGATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCCAAGACGGGTGAGTTCACCCGCTACTACAACCCCAAGTACTTCCTGGACT
tcttgac putative branch site (score: 3)
tcgtcccgcccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctccattctgtggttggcaccagctccgcacagagttgcaccgcagcgctctcttgaccccagctagcacctgcaccccatcgtcccgccccccgcagGATGACTGCACCCGCTTCCAGCAGTTCCCTCCCGGGCACTTCTACAACTCCAAGACGGGTGAGTTCACCCGCTACTACAACCCCAAGTACTTCCTGGACT
- - - - - tgtggtt
- - - - - - - - - - - - - -ccgcaca
- - - - - - - - - - - - - - - - - - - - caccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgca