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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGGCACCGACCACCACGAGTTCCACTTCACGGTGCAGGAGGGCATTGACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatggggggggggggggcggggaaaaaggctgtggggtacaccgcgggatgggctcacggcggctgtgtcgaggtgcgctgtccatggttgcaagctcgccgtatgcctgactcgcggccccgtgtgtctggctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97202
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16432675|gb|BI997901.1|BI997901
EST:     ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACC                         ATCCGCGCCTNCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
EST: gi|10794090|gb|AV631456.1|AV631456
EST:     ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACC                         ATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
EST: gi|9210297|gb|BE337212.1|BE337212
EST:     ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACC                         ATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
EST: gi|161814299|gb|FC102065.1|FC102065
EST:     ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACC                         ATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
EST: gi|16435516|gb|BM000736.1|BM000736
EST:     CGCCATCAGCGAGGTCATCTACCACATTGAGGACCTTTGACGTCACCACC                         ATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: CGCCATCAGCGAGGTCATCTACCACATTGA-GACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG