1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgaaaaccgcatcacacacagcacagtggagcgcagtacacccagcagcagcttgaccgtggccggcctctttgtgtctgtctctgtccaacccccgcagGAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTACGACTGCCTGCGCGCCAACAAGTCCACCATGGCTTGGGGCGTGGAGGCGC
species | Chlamydomonas reinhardtii |
transcript | EDO97202 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAG GAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTACEST: gi|10794090|gb|AV631456.1|AV631456
genomic: GTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAGgtgcggcggc ... acccccgcagGAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTAC
EST: CCGACGAGGTGTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAG GAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTACEST: gi|9210297|gb|BE337212.1|BE337212
genomic: CCGACGAGGTGTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAGgtgcggcggc ... acccccgcagGAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTAC
EST: CCGACGAGGTGTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAG GAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTACEST: gi|161814299|gb|FC102065.1|FC102065
genomic: CCGACGAGGTGTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAGgtgcggcggc ... acccccgcagGAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTAC
EST: CCGACGAGGTGTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAG GAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTACEST: gi|16435516|gb|BM000736.1|BM000736
genomic: CCGACGAGGTGTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAGgtgcggcggc ... acccccgcagGAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTAC
EST: CCGACGAGGTGTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAG GAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTAC
genomic: CCGACGAGGTGTTCGGCGGCTACCTGTACTTCCACAAGGCGCCCAACAAGgtgcggcggc ... acccccgcagGAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTAC
cagcagcttgaccgtggccggcctctttgtgtctgtctctgtccaacccccgcagGAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTACGACTGCCTGCGCGCCAACAAGTCCACCATGGCTTGGGGCGTGGAGGCGC
gcttgac putative branch site (score: 4)
cccccgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaaccgcatcacacacagcacagtggagcgcagtacacccagcagcagcttgaccgtggccggcctctttgtgtctgtctctgtccaacccccgcagGAGGAGTTCCAGTCGGAGACTGTGCGCAAGATCCAGGACCTGTACAAGTACGACTGCCTGCGCGCCAACAAGTCCACCATGGCTTGGGGCGTGGAGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - aaccgca
- - - - - - -acacaca
- - - - - - - - - - gcacagt
- - - - - - - - - - - - - - - - - - -acaccca