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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatggggggggggggggcggggaaaaaggctgtggggtacaccgcgggatgggctcacggcggctgtgtcgaggtgcgctgtccatggttgcaagctcgccgtatgcctgactcgcggccccgtgtgtctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTGGGCGTGAAGATGGTGCTGTCAGGCGAGGGTTCCGACGAGGTGTTCGGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97202
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16432675|gb|BI997901.1|BI997901
EST:     ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACC                         ATCCGCGCCTNCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
EST: gi|10794090|gb|AV631456.1|AV631456
EST:     ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACC                         ATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
EST: gi|9210297|gb|BE337212.1|BE337212
EST:     ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACC                         ATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
EST: gi|161814299|gb|FC102065.1|FC102065
EST:     ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACC                         ATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: ACGCCATCAGCGAGGTCATCTACCACATTGAGACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
EST: gi|16435516|gb|BM000736.1|BM000736
EST:     CGCCATCAGCGAGGTCATCTACCACATTGAGGACCTTTGACGTCACCACC                         ATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG
genomic: CGCCATCAGCGAGGTCATCTACCACATTGA-GACCTTTGACGTCACCACCgtaagtcatg ... ctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catggttgcaagctcgccgtatgcctgactcgcggccccgtgtgtctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTGGGCGTGAAGATGGTGCTGTCAGGCGAGGGTTCCGACGAGGTGTTCGGCG
                      gcctgac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtcatggggggggggggggcggggaaaaaggctgtggggtacaccgcgggatgggctcacggcggctgtgtcgaggtgcgctgtccatggttgcaagctcgccgtatgcctgactcgcggccccgtgtgtctggctgcagATCCGCGCCTCCACGCCCATGTTCCTGATGAGCCGCAAGATCAAGGCGCTGGGCGTGAAGATGGTGCTGTCAGGCGAGGGTTCCGACGAGGTGTTCGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG