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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCACCGTGAACGGTGAGATCTACAACTACAAGGAGCTGCGCCAGCAGATCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAGgtacggggacatgcaccccacacggatgcactgggttaagctgccaggattgcggcataaccgaggggggaggtggaggcacgagggggagggggaagct...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97202
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784267|gb|AV640939.1|AV640939
EST:     TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAG                         GTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
genomic: TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAGgtacggggac ... ctatgtgcagGTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
EST: gi|15367693|gb|BI527119.1|BI527119
EST:     TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAG                         GTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
genomic: TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAGgtacggggac ... ctatgtgcagGTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
EST: gi|15695274|gb|BI719579.1|BI719579
EST:     TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAG                         GTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
genomic: TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAGgtacggggac ... ctatgtgcagGTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
EST: gi|22063923|gb|BQ815506.1|BQ815506
EST:     TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAG                         GTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
genomic: TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAGgtacggggac ... ctatgtgcagGTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
EST: gi|10786249|gb|AV642921.1|AV642921
EST:     TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAG                         GTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
genomic: TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAGgtacggggac ... ctatgtgcagGTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
EST: gi|16072104|gb|BI874100.1|BI874100
EST:     TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAG                         GTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG
genomic: TCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAGgtacggggac ... ctatgtgcagGTGATTAGCCACCTGTACGAGCTGCACGGCGAGAAGGTGGCCTCCATGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTCACCGTGAACGGTGAGATCTACAACTACAAGGAGCTGCGCCAGCAGATCACGGATGCCTGCCCCGGCAAGAAGTTCGCCACCAACAGCGATTGCGAGgtacggggacatgcaccccacacggatgcactgggttaagctgccaggattgcggcataaccgaggggggaggtggaggcacgagggggagggggaagct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cataacc