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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccattttctcgtccgctctttgtctatatcagaatctacaatcttacaaatcacttatcaaaaggctgcaactgctgatgctcaatataatttacagGTTCCATTCTTGGTTGATCCAAACACCGGTGTCCAATTAGGTGATTACGAGAAGATTCTGGCTTACCTCTTCAAGACATATTCTTCAGCAGCATTTGCAT

Basic information

species Arabidopsis thaliana
transcript AT4G10000.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080842|gb|DR376599.1|DR376599
EST:     AAGGGTCCACACGGATGAAATCACTTCTAAATGCTTCAGGATCCAATAAG                         GTTCCATTCTTGGTTGATCCAAACACCGGTGTCCAATTAGGTGATTACGAG
genomic: AAGGGTCCACACGGATGAAATCACTTCTAAATGCTTCAGGATCCAATAAGgtccattttc ... taatttacagGTTCCATTCTTGGTTGATCCAAACACCGGTGTCCAATTAGGTGATTACGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttacaaatcacttatcaaaaggctgcaactgctgatgctcaatataatttacagGTTCCATTCTTGGTTGATCCAAACACCGGTGTCCAATTAGGTGATTACGAGAAGATTCTGGCTTACCTCTTCAAGACATATTCTTCAGCAGCATTTGCAT
                              tgctgat  putative branch site (score: 3)
                                       tcaatataatttaca  TA-rich tract