Sequence
atgc intronic sequence ATGC exonic sequencegtgagcattctcagaatctggtatacttggtcaaactatctgggatgtgtagtctccagctcctagcgtgaataagttttaattgtatcactgacttcattagaattgtccagCACCTTGTTCACTGGATGGATGCCAACTCTTCTCCGAGCAGGTAGAGGCATGTCATTGTGGGATAAGGCTTCAACAGATCTGCCACCTAAAATGCTCGAG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G10000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G10000.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv18s0001g06900.t01 (Vitis vinifera), 3'ss of exon 7
gtgagcattctcagaatctggtatacttggtcaaactatctgggatgtgtagtctccagctcctagcgtgaataagttttaattgtatcactgacttcattagaattgtccagCACCTTGTTCACTGGATGGATGCCAACTCTTCTCCGAGCAGGTAGAGGCATGTCATTGTGGGATAAGGCTTCAACAGATCTGCCACCTAAAATGCTCGAG
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gt-attgtgcttatgcacttccattttattttagtttattttagtt-ttttgttttcttttgttagcacttttatttttcctctaattgaatgatcttgt----actatgaagCACATTGTTCACAGGATGGATGCCAACTATTCTTCGAGCAGGTAGAGGAATGACACTATGGGAAAAGGCCAGACTAGACCCACCAGCCAAAAAGCTGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86080842|gb|DR376599.1|DR376599EST: TTTAAACAATATGGAAATGGAAGAGGCCCTTCCACAGGACTTCTGGAAAG CACCTTGTTCACTGGATGGATGCCAACTCTTCTCCGAGCAGGTAGAGGCAT
genomic: TTTAAACAATATGGAAATGGAAGAGGCCCTTCCACAGGACTTCTGGAAAGgtgagcattc ... aattgtccagCACCTTGTTCACTGGATGGATGCCAACTCTTCTCCGAGCAGGTAGAGGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctcctagcgtgaataagttttaattgtatcactgacttcattagaattgtccagCACCTTGTTCACTGGATGGATGCCAACTCTTCTCCGAGCAGGTAGAGGCATGTCATTGTGGGATAAGGCTTCAACAGATCTGCCACCTAAAATGCTCGAG
cactgac putative branch site (score: 2)
aataagttttaattgt TA-rich tract