1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gccgtttatagaatattgttttactgatttgttacaattggttacgtgactaagagctcttaatttcttttgatttatcttatggttggcatgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGAGTATCAACTGGGAGTATAGATAACCAGGATGTCTCTTCTAATCCGCCTT
species | Arabidopsis thaliana |
transcript | AT4G10000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG GTTGCAACTTCTTCATTTGGCATCTGTTGCAAGACTTCCATGGGGGATCTCEST: gi|86045284|gb|DR341039.1|DR341039
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATT-GGCATCTGTTGCAAGACTTCCATGGGG-ATCTC
EST: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGAEST: gi|86045281|gb|DR341036.1|DR341036
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
EST: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGAEST: gi|124916526|gb|EH990400.1|EH990400
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
EST: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGAEST: gi|86045280|gb|DR341035.1|DR341035
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGA
EST: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGAEST: gi|86045286|gb|DR341041.1|DR341041
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
EST: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGAEST: gi|86045282|gb|DR341037.1|DR341037
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
EST: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
gtgactaagagctcttaatttcttttgatttatcttatggttggcatgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGAGTATCAACTGGGAGTATAGATAACCAGGATGTCTCTTCTAATCCGCCTT
ttaatttcttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgtttatagaatattgttttactgatttgttacaattggttacgtgactaagagctcttaatttcttttgatttatcttatggttggcatgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGAGTATCAACTGGGAGTATAGATAACCAGGATGTCTCTTCTAATCCGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG