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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctgtttttaattcatggagttgttttctcatttagtcaaataattatgttcatgttttgcaacacttatgtttttgggcgtaatctctaaaac...

Basic information

species Arabidopsis thaliana
transcript AT4G10000.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045285|gb|DR341040.1|DR341040
EST:     GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG                         GTTGCAACTTCTTCATTTGGCATCTGTTGCAAGACTTCCATGGGGGATCTC
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATT-GGCATCTGTTGCAAGACTTCCATGGGG-ATCTC
EST: gi|86045284|gb|DR341039.1|DR341039
EST:     GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG                         GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
EST: gi|86045281|gb|DR341036.1|DR341036
EST:     GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG                         GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
EST: gi|124916526|gb|EH990400.1|EH990400
EST:     GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG                         GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGA
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGA
EST: gi|86045280|gb|DR341035.1|DR341035
EST:     GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG                         GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
EST: gi|86045286|gb|DR341041.1|DR341041
EST:     GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG                         GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
EST: gi|86045282|gb|DR341037.1|DR341037
EST:     GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAG                         GTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA
genomic: GGAGGTGATCCTTCTCAACAGCGGAATCATGCTCTCGAGgttagtcctg ... atgaatacagGTTGCAACTTCTTCATTGGCATCTGTTGCAAGACTTCCATGGGGATCTCGA