Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTGgtgagtcgtaagttccatcatcaatacctgattgtcgtttttctctggatatcttttcatcggttcttttctctctttgaatttag

Basic information

species Arabidopsis thaliana
transcript AT4G10000.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080842|gb|DR376599.1|DR376599
EST:     CGAATACTGAAACTTTAATGTATGAGAGTG                         GTGACATCGTAAAGTACCTATTTAAACAATATGGAAATGGAAGAGGCCCTT
genomic: CGAATACTGAAACTTTAATGTATGAGAGTGgtgagtcgta ... ttgaatttagGTGACATCGTAAAGTACCTATTTAAACAATATGGAAATGGAAGAGGCCCTT
EST: gi|86045280|gb|DR341035.1|DR341035
EST:     GTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTG                         GTGACATCGTAAAGTACCTATTTA
genomic: GTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTGgtgagtcgta ... ttgaatttagGTGACATCGTAAAGTACCTATTTA