1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAAAGAGATgtaattttacgttcttgttctgtcaattggtttcgttttcatcattccatagcagtttttgttttccttctgtcgtcagtctttaaacttctgagaatgaaaatctgcag
species | Arabidopsis thaliana |
transcript | AT4G10000.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAANNAGAT GTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTGEST: gi|86045286|gb|DR341041.1|DR341041
genomic: GGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAAAGAGATgtaattttac ... aaatctgcagGTTTCCATTTCTCGTCGACCCGAATACTGAAACTTTAATGTATGAGAGTG
EST: GATCTATAAGACACAGAGAACTGGGTTAGAAGATCTGGCGGAAAAGAGAT GTTTCCATTTCTCGTCGACCCGA
genomic: GATCTATAAGACACAGAGAACTGG-TTAGAAGATCTGGCGGAAAAGAGATgtaattttac ... aaatctgcagGTTTCCATTTCTCGTCGACCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAAAGAGATgtaattttacgttcttgttctgtcaattggtttcgttttcatcattccatagcagtttttgttttccttctgtcgtcagtctttaaacttctgagaatgaaaatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA