1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaaccgaatcatattttccagagagatggctcattaagcaatatacaaagtttatcctgacatttgttggtgacttgttgttcagGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAAAGAGAT
species | Arabidopsis thaliana |
transcript | AT4G10000.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAA AEST: gi|86045281|gb|DR341036.1|DR341036
genomic: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccg ... tgttgttcag-
EST: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAA AEST: gi|86045280|gb|DR341035.1|DR341035
genomic: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccg ... tgttgttcag-
EST: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAA GTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGAEST: gi|86045286|gb|DR341041.1|DR341041
genomic: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccg ... tgttgttcagGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGA
EST: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAA GTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGGTTAGAAG
genomic: TTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaagaaccg ... tgttgttcagGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGG-TTAGAAG
tcattaagcaatatacaaagtttatcctgacatttgttggtgacttgttgttcagGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAAAGAGAT
tcctgac putative branch site (score: 2)
aatatacaaagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaccgaatcatattttccagagagatggctcattaagcaatatacaaagtttatcctgacatttgttggtgacttgttgttcagGTTTATCCTTGTCCTAAAGGATCTATAAGACACAGAGAACTGGTTAGAAGATCTGGCGGAAAAGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA