1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTGGAAAGGGTGGAAAACGTGATTTTGGGTTTGTCCACTATGCTGAAAGATCTAGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGgtaagtttttttagtcatctagaagacagctattgagtattatgaacgttatgctatcaatttgtctctaatggcgtatgttttttcgtctcaagagatgttattgagtaacacattccacaaacttgcaaactacag
species | Arabidopsis thaliana |
transcript | AT4G00830.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATG GTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATGEST: gi|47829721|gb|CK119405.1|CK119405
genomic: TTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGgtaagttttt ... caaactacagGTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATG
EST: ATCTAGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATG GTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATG
genomic: ATCTAGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGgtaagttttt ... caaactacagGTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGGAAAGGGTGGAAAACGTGATTTTGGGTTTGTCCACTATGCTGAAAGATCTAGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGgtaagtttttttagtcatctagaagacagctattgagtattatgaacgttatgctatcaatttgtctctaatggcgtatgttttttcgtctcaagagatgttattgagtaacacattccacaaacttgcaaactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG