1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagatgacttaatcaatctgattgccatgcttgatcttacttaattgccttactaattatcttcttgttacttgtagGACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTATAACAATGCATGTGCTGATTATTCAAGACAGAAAATGATAGATTCTAATT
species | Arabidopsis thaliana |
transcript | AT4G00830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTCATAGAGGATGTTGGTCCTGGAGTGGAGAACATCGAGCTCATAAAA GACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTATEST: gi|116417151|gb|EG459743.1|EG459743
genomic: AAGTCATAGAGGATGTTGGTCCTGGAGTGGAGAACATCGAGCTCATAAAAgttagatgac ... ttacttgtagGACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTAT
EST: AAGTCATAGAGGATGTTGGTCCTGGAGTGGAGAACATCGAGCTCATAAAA GACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTEST: gi|164110510|gb|ES035481.1|ES035481
genomic: AAGTCATAGAGGATGTTGGTCCTGGAGTGGAGAACATCGAGCTCATAAAAgttagatgac ... ttacttgtagGACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTT
EST: TCATAGAGGATGTTGGTCCTGGAGTGGAGAACATCGAGCTCATAAAA GACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTATEST: gi|164225890|gb|EL979017.1|EL979017
genomic: TCATAGAGGATGTTGGTCCTGGAGTGGAGAACATCGAGCTCATAAAAgttagatgac ... ttacttgtagGACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTAT
EST: GGAGTGGAGAACATCGAGCTCATAAAA GACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTAT
genomic: GGAGTGGAGAACATCGAGCTCATAAAAgttagatgac ... ttacttgtagGACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTAT
tgccatgcttgatcttacttaattgccttactaattatcttcttgttacttgtagGACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTATAACAATGCATGTGCTGATTATTCAAGACAGAAAATGATAGATTCTAATT
tactaat putative branch site (score: 1)
tcttcttgttactt putative PPT
ttactaattatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatgacttaatcaatctgattgccatgcttgatcttacttaattgccttactaattatcttcttgttacttgtagGACCCAACAAATACCACTCGTAACCGTGGTTTTGCATTTGTTTTGTACTATAACAATGCATGTGCTGATTATTCAAGACAGAAAATGATAGATTCTAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT