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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttttagtcatctagaagacagctattgagtattatgaacgttatgctatcaatttgtctctaatggcgtatgttttttcgtctcaagagatgttattgagtaacacattccacaaacttgcaaactacagGTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATGACCCTTCTTCTTATTCTTACGGGGCTGCACCTACTCCTGCCCCCTTTGT

Basic information

species Arabidopsis thaliana
transcript AT4G00830.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125233798|gb|EL247883.1|EL247883
EST:     TTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATG                         GTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATG
genomic: TTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGgtaagttttt ... caaactacagGTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATG
EST: gi|47829721|gb|CK119405.1|CK119405
EST:     ATCTAGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATG                         GTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATG
genomic: ATCTAGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGgtaagttttt ... caaactacagGTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgtctcaagagatgttattgagtaacacattccacaaacttgcaaactacagGTCAACCACTAGAAGTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATGACCCTTCTTCTTATTCTTACGGGGCTGCACCTACTCCTGCCCCCTTTGT
                      gagtaac  putative branch site (score: 2)
              atgttatt  TA-rich tract