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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacattctaactagtgaagcatgatgctataaaatgctctacagggaagaacacaactctcatcgttcaatattctatattttttgcagTTGTGGCCAGAAAAATTTCAGAACAAAACAAATGGAGTAACACCAAGGCGATGGATTCGTTTTTGCAACCCATATTTAAGTGATATTATAACTAACTGGA

Basic information

species Arabidopsis thaliana
transcript AT3G29320.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G29320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G074158_T02 (Zea mays), 3'ss of exon 8
gtaaacattctaactagtgaagcatgatgctataaaatgctctacagggaag-aacacaactctcatcgttcaatattctatattttttgcagTTGTGGCCAGAAAAATTTCAGAACAAAACAAATGGAGTAACACCAAGGCGATGGATTCGTTTTTGCAACCCATATTTAAGTGATATTATAACTAACTGGA
|||   ||   |     |||| | | |||     |  |    || |  ||      | ||  ||  ||||    | |||| | | ||| |||| ||||||||   ||||||||||| |||||||||||||| || || ||||| ||||| || ||||| || ||    |||||||   | ||  | || ||||
gtattaatatgagaatctgaatctt-atgtctccatttttcttataatgatttgggaaaatgctgttcgtcatctgttctgtttctttggcagATGTGGCCAACTAAATTTCAGAATAAAACAAATGGAGTGACTCCCAGGCGTTGGATCCGGTTTTGTAATCCTGCATTAAGTGCATTAATTTCAAAGTGGA

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G06040.1 (Glycine max), 3'ss of exon 8
------gtaaacattctaactagtgaag----catgatgctataa-aatgctctacagggaagaacacaactctcatcgttcaatattctatattttttgcagTTGTGGCCAGAAAAATTTCAGAACAAAACAAATGGAGTAACACCAAGGCGATGGATTCGTTTTTGCAACCCATATTTAAGTGATATTATAACTAACTGGA
         | ||||  | |   |   |    | | |   ||| | || | ||||   |||| |       | |||| |  |  ||| |||| ||| ||| |||||||||| || || || || |||||||||||||| || ||||||||| |||||||  | || ||||| ||| || | ||| | || |||||  | ||||
acctttaatagcatttcatccttttctgttttctttagattatgacaaggttcta---ggaaaattgtttatatcattgacctctatgctatgtttcttgtagTTGTGGCCTGAGAAGTTCCAAAACAAAACAAATGGTGTGACACCAAGGAGATGGATCAGGTTCTGCAATCCAGATCTGAGTAAAATAATAACCGAGTGGA

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G03490.1 (Glycine max), 3'ss of exon 8
------gtaaacattctaactagtgaag----catgatgctataaaatgctctacagggaagaacacaactctcatcgttcaatattctatattttttgcagTTGTGGCCAGAAAAATTTCAGAACAAAACAAATGGAGTAACACCAAGGCGATGGATTCGTTTTTGCAACCCATATTTAAGTGATATTATAACTAACTGGA
        || ||||    |   |   |    | | |   ||| | | | | |    | ||      |  | |||| |  |  ||| | || ||| ||| |||||||||| || || || || |||||||||||||| || ||||||||| |||||||  | || ||||| ||| || | ||| | || |||||  | ||||
acctgtaaaagcatttggtccttttctgttttctttagattatgacaagattttagagaaattgttta--tatcattgacctctatgccatgtttcttgtagTTGTGGCCCGAGAAGTTCCAAAACAAAACAAATGGTGTGACACCAAGGAGATGGATCAGGTTCTGCAATCCAGATCTGAGTAAAATAATAACCGAGTGGA

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv14s0108g01560.t01 (Vitis vinifera), 3'ss of exon 8
------------------------------------------------------------gtaaacattctaactagtgaagcatgatgctataaa----atgctc----tacagggaagaacacaactctcatcgttcaatattctatattttttgcagTTGTGGCCAGAAAAATTTCAGAACAAAACAAATGGAGTAACACCAAGGCGATGGATTCGTTTTTGCAACCCATATTTAAGTGATATTATAACTAACTGGA
                                                            | |    |   || | |  | |  |||    || ||    ||| ||    || |  ||  ||  |  || | |||  |    || ||  | ||||  ||||||||||| || |||||||| || || || ||||| || ||||||||  ||||||| ||||| ||||| ||| |||||||||| || ||||| || ||||
gtaagcttgtcaataggtaaatatgtgtatatattattattattatcatcaaaatatgttgcagttctaggaaattgataggattgaattaattaaggccatgttcacaatataatgattaatgctcctgtaatctgttcccatacttcaattttgacagTTGTGGCCTGAGAAATTTCAAAATAAGACCAATGGTGTGACACCAAGAAGATGGATCCGTTTCTGCAATCCAGATTTAAGTGAGATAATAACCAAGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctctacagggaagaacacaactctcatcgttcaatattctatattttttgcagTTGTGGCCAGAAAAATTTCAGAACAAAACAAATGGAGTAACACCAAGGCGATGGATTCGTTTTTGCAACCCATATTTAAGTGATATTATAACTAACTGGA
                                           tatttttt  CT-rich tract
                               ttcaatattctatatt  TA-rich tract