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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCGAGATTAGAGAAGAAGTTGGAGAAGAAAATTTCTTCCTCTTTGGTGCCAAAGCTGATCAGATTGTGAACCTCAGGAAGGAGAGAGCAGAGGGAAAGgtatatactatttgaagagttaaccttaccatgcttctgttttagcatcaacaagaatttgatttttgacctggctcttggcattccag

Basic information

species Arabidopsis thaliana
transcript AT3G29320.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125069154|gb|EL135028.1|EL135028
EST:     CCAAAGCTGATCAGATTATGAACCTCAGGAAGGAGAGAGCAGAGGGAAAG                         TTTGTTCCCGATCCTAACTTTTGAAGAAGTCAAGAAGTTCGTTGGAAGCGG
genomic: CCAAAGCTGATCAGATTGTGAACCTCAGGAAGGAGAGAGCAGAGGGAAAGgtatatacta ... ggcattccagTTTGTTCCCGATCCTA-CTTTTGAAGAAGTCAAGAAGTTCGTTGGAAGCGG
EST: gi|125289696|gb|EL303781.1|EL303781
EST:     AGGAGAGAGCAGAGGGAAAG                         TTTGTTCCCGATCCTACTTTTGAAGAAGTCAAGAAGTTCGTTGGAAGCGGC
genomic: AGGAGAGAGCAGAGGGAAAGgtatatacta ... ggcattccagTTTGTTCCCGATCCTACTTTTGAAGAAGTCAAGAAGTTCGTTGGAAGCGGC
EST: gi|125280352|gb|EL294437.1|EL294437
EST:     AGCAGAGGGAAAG                         TTTGTTCCCGATCCTACTTTTGTAAGAAGTCAAGAAGTTCGTTGGAAGCGG
genomic: AGCAGAGGGAAAGgtatatacta ... ggcattccagTTTGTTCCCGATCCTACTTTTG-AAGAAGTCAAGAAGTTCGTTGGAAGCGG
EST: gi|124731744|gb|EH823146.1|EH823146
EST:     CAGATTGTGAACCTCAGGAAGGAGAGAGCAGAGGGAAAG                         TTTGTTCCCGATCCTACTTTTGAAGAAGTCAAGAAGTTCGTTGGAAGCGGC
genomic: CAGATTGTGAACCTCAGGAAGGAGAGAGCAGAGGGAAAGgtatatacta ... ggcattccagTTTGTTCCCGATCCTACTTTTGAAGAAGTCAAGAAGTTCGTTGGAAGCGGC
EST: gi|125302177|gb|EL316262.1|EL316262
EST:     GAGCAGAGGGAAAG                         TTTGTTCCCGATCCTACTTTTGTAAGAAGTCAAGAAGTTCGTTGGAAGCGG
genomic: GAGCAGAGGGAAAGgtatatacta ... ggcattccagTTTGTTCCCGATCCTACTTTTG-AAGAAGTCAAGAAGTTCGTTGGAAGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTCGAGATTAGAGAAGAAGTTGGAGAAGAAAATTTCTTCCTCTTTGGTGCCAAAGCTGATCAGATTGTGAACCTCAGGAAGGAGAGAGCAGAGGGAAAGgtatatactatttgaagagttaaccttaccatgcttctgttttagcatcaacaagaatttgatttttgacctggctcttggcattccag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG