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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATTTGCCACATATGTGCAAGCTAAGAGAATTGTTAAATTTATCACAGATGTTGCGTCTACAATTAACCATGATCCAGAAATAGGTGACCTCCTTAAGgtatatatctacttacgttcttgtattagtcgtattctcaagcgtataacggaaaatctgcaataattatctggtttttgcatctgtggagattggcacttactaattagaagtgttaactaaacatgtag

Basic information

species Arabidopsis thaliana
transcript AT3G29320.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA13G06040.1 (Glycine max), 5'ss of exon 11
AGCATTTGCCACATATGTGCAAGCTAAGAGAATTGTTAAATTTATCACAGATGTTGCGTCTACAATTAACCATGATCCAGAAATAGGTGACCTCCTTAAGgtatatatctacttacgttcttgtattagtcgtattctcaagcgtataacggaaaatctgcaataattatctggtttttgcatctgtggagattggcacttactaattagaagtgttaactaaacatgtag
||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| | | ||| | || |||||||| |||||||| || || ||||||||| ||||      ||  | ||  |  | |  | || |||   || |     |   | ||   ||  | |||      |     |    | |  |      |  | |                        
AGCATTTGCTACATATGTGCAAGCCAAGAGAATTGTGAAATTTATTACAGATGTTGGGGCAACAGTAAATCATGATCCTGAAATAGGAGATCTACTTAAGgtacatatg-----actcttttaaaacatttct-ttttcatttgt-tggtttatgttttgtgctagatttcttaggcatattgttcaaaataaagatgtaaagcatt------------------------

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA19G03490.1 (Glycine max), 5'ss of exon 11
AGCATTTGCCACATATGTGCAAGCTAAGAGAATTGTTAAATTTATCACAGATGTTGCGTCTACAATTAACCATGATCCAGAAATAGGTGACCTCCTTAAGgtatatatctacttacgttcttgtattagtcgtattctcaagcgtataacggaaaatctgcaataattatctggtttttgcatctgtggagattggcacttactaattagaagtgttaactaaacatgtag
||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| | ||||| | || ||||| || |||||||| || || ||||||||| ||||     |   |||    |     | | || |||   || |     |   | ||   ||   || | ||| ||| |  |   ||  |      ||| |  |                        
AGCATTTGCTACATATGTGCAAGCCAAGAGAATTGTGAAATTTATTACAGATGTTGGGGCTACAGTAAATCATGACCCTGAAATAGGAGATCTACTTAAGgtacatatgactctgttttccaacag----ctttttttcatttgt-tggtttatgttttgt--taggcatattgttgttgaaaataaagatctaaagcattattcct------------------------

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0108g01560.t01 (Vitis vinifera), 5'ss of exon 11
AGCATTTGCCACATATGTGCAAGCTAAGAGAATTGTTAAATTTATCACAGATGTTGCGTCTACAATTAACCATGATCCAGAAATAGGTGACCTCCTTAAGgtatatatctacttacgttcttgtattagtcgtattctcaagcgtataacggaaaatctgcaataattatctggtt-tttgcatctgtggagattggcacttactaattagaagtgttaactaaacatgtag
||||||||| || ||||||||||| ||||| ||||| ||||| ||||| ||||||| | ||||| | || |||||| |||||||||||||  | || |||||||  |   | |     | |||  ||      |    || ||   | ||       || |  | |  | ||| |  ||| ||| || | |     || ||||| | ||                       
AGCATTTGCTACTTATGTGCAAGCCAAGAGGATTGTGAAATTCATCACGGATGTTGGGACTACAGTAAATCATGATTCAGAAATAGGTGATTTGCTGAAGgtatgaagtaattctaaatattgccttgtgaacac---catgcactttaca------cttctgtcagcagctgatcattttcatatg-gtattagagctcttaccacttg----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164077640|gb|ES046680.1|ES046680
EST:     TTAACCATGATCCAGAAATAGGTGACCTCCTTAAG                         GTTATCTTTGTTCCTGATTACAATGTCAGTGTTGCTGAATTGCTCATTCCA
genomic: TTAACCATGATCCAGAAATAGGTGACCTCCTTAAGgtatatatct ... aaacatgtagGTTATCTTTGTTCCTGATTACAATGTCAGTGTTGCTGAATTGCTCATTCCA
EST: gi|124954357|gb|EL029458.1|EL029458
EST:     GTCTACAATTAACCATGATCCAGAAATAGGTGACCTCCTTAAG                         GTTATCTTTGTTCCTGATTACAATGTCAGTGTTGCTGAATTGCTACATTCC
genomic: GTCTACAATTAACCATGATCCAGAAATAGGTGACCTCCTTAAGgtatatatct ... aaacatgtagGTTATCTTTGTTCCTGATTACAATGTCAGTGTTGCTGAATTGCT-CATTCC