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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgttaaccatgttgattattatgcattaaccgatgtttattactaacagacgtcttagagatgatcgtctttgcgagtctattgtttggttttacagagctgttatcttctttatatgtactgagatgctagatacttcacttccattttgtagGAGCCAGATCCTGCACTTGGGAATGGTGGACTCGGGAGACTTGCCTCGTGTTTTTTGGATTCCATGGCAACTTTGAATTATCCGGCTTGGGGTTATGGAC

Basic information

species Arabidopsis thaliana
transcript AT3G29320.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G29320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g55090.1 (Oryza sativa), 3'ss of exon 3
gtgagttgttaaccatgttgattattatgcattaaccgatgtttattactaacagacgtcttagagatgatcgtctttgcgagtctattgtttggttttacagagctgttatcttctttatatgtactgagat-------gctagatacttcacttccattttgtagGAGCCAGATCCTGCACTTGGGAATGGTGGACTCGGGAGACTTGCCTCGTGTTTTTTGGATTCCATGGCAACTTTGAATTATCCGGCTTGGGGTTATGGAC
                                                                  ||  |    ||  | | |   || ||  | || | |||| |    | |  |||| |  || | ||||       ||||  |   | | | | ||   ||||||||||||| |||| |||||||||||||| || ||  |  | || || ||||| ||||||||  |||||||  | |||||||| || ||||| |||||||
----------------------------------------------------------------ctatatttaatttcaccaatagcttatt--gattcatagagttccc-tttattttagaaatattaagattggatatgctacttttgtaattgcaatcaagtagGAGCCAGATGCTGCCCTTGGGAATGGTGGTCTAGGCCGGTTAGCTTCCTGTTTCTTGGATTCTCTGGCAACCCTAAATTATCCAGCATGGGGATATGGAC

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA19G03490.1 (Glycine max), 3'ss of exon 3
gtgagttgttaaccatgttgattattatgcattaaccgatgtttattactaacagacgtcttagagatgatcgtctttgcgagtctattgtttggttttacagagctgttatcttctttatatgtactgagatgctagatacttcacttccatt------ttgtagGAGCCAGATCCTGCACTTGGGAATGGTGGACTCGGGAGACTTGCCTCGTGTTTTTTGGATTCCATGGCAACTTTGAATTATCCGGCTTGGGGTTATGGAC
                                                            |||  ||  | |  ||     ||    |  | |  |    || || |  ||| ||   |  || | || ||| | |    | |||| ||   ||      |  |||||||||||| |||||||||| |||||||| || ||| | ||||| || ||||| ||||| ||  ||||||| ||||| ||||| ||||||||||||||| 
-----------------------------------------------------------tttactgagcacctactgcaacagga-gtaatctaat----caaagttaatat-ttggctgcattttcttaga-gttgagcaattcattttgtttggccaatgatagGAGCCAGATGCTGCACTTGGAAATGGTGGTCTTGGGCGTCTTGCTTCATGTTTCTTGGACTCTTTGGCAACCTTGAACTATCCAGCTTGGGGTTATGGAT

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G06040.1 (Glycine max), 3'ss of exon 3
gtgagttgttaaccatgttgattattatgcattaaccgatgtttattactaacagacgtcttagagatgatcgtctttgcgagtctattgtttggttttacagagctgttatcttctttatatgtactgagatgctagatacttcacttccattttg-tagGAGCCAGATCCTGCACTTGGGAATGGTGGACTCGGGAGACTTGCCTCGTGTTTTTTGGATTCCATGGCAACTTTGAATTATCCGGCTTGGGGTTATGGAC
                                                  | ||        |       |  |||    ||   |  | |||||||  ||            |||||    |  |   |     |   |    |   |  ||| || |||||||||||| |||||||||| |||||||| || ||| | ||||| || ||||| ||||| ||  |||| || ||||| ||||| ||||||||||||||| 
--------------------------------------------------agcacctactgcaacaggagtgatctaattgaaattcatatttggttgcac-----------tttcttagagttgagcaattcattttgtttggcctatgaattatgatagGAGCCAGATGCTGCACTTGGAAATGGTGGTCTTGGGCGTCTTGCTTCATGTTTCTTGGACTCTTTGGCCACCTTGAACTATCCAGCTTGGGGTTATGGAT

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0108g01560.t01 (Vitis vinifera), 3'ss of exon 3
gtgagttgttaaccatgttgattattatgcattaaccgatgtttattactaacagacgtcttagagatgatcgtctttgcgagtctattgtttggttttacagagctgttatcttctttatatgta-ctgagatg-ctagatacttcacttccattttgtagGAGCCAGATCCTGCACTTGGGAATGGTGGACTCGGGAGACTTGCCTCGTGTTTTTTGGATTCCATGGCAACTTTGAATTATCCGGCTTGGGGTTATGGAC
                                                          | | |     | | | ||||     |  | | |||       || |    || || ||| | | |||  |||   || ||  |  | |   ||     |  ||||| |||||| |||||||||| ||||| || || ||| | ||||| || || ||| |||| ||| ||||||| || ||||| || || |||||||||||||
----------------------------------------------------------tttgaatctagtttggctttttttatgcacttttt----cagcaaataacttgtcctctgtgtgtgtggctgttgtggctgaactcattggttggcaataatagGAACCAGATGCTGCACTTGGAAATGGGGGTCTTGGGCGGCTTGCTTCCTGCTTTCTGGACTCCTTGGCAACATTAAATTACCCAGCATGGGGTTATGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttatcttctttatatgtactgagatgctagatacttcacttccattttgtagGAGCCAGATCCTGCACTTGGGAATGGTGGACTCGGGAGACTTGCCTCGTGTTTTTTGGATTCCATGGCAACTTTGAATTATCCGGCTTGGGGTTATGGAC
                                    cttcacttccatttt  CT-rich tract
        ttctttatat  TA-rich tract