Sequence
atgc intronic sequence ATGC exonic sequenceTTATCCGGCTTGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATTACAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGgtcttattctcttattcttttctcatacagcgtttgctattgaacagtatttcctaatttgtactctcttgtagcaatgctgagcagtggacatgtttattggcttacctgtttctttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G29320.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G03490.1 (Glycine max), 5'ss of exon 4
TTATCCGGCTTGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATTACAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGgtcttattctcttattcttttctcatacagc--gtttgctattgaacagtatt-tcctaatttgtac-tctcttgtagcaatgctgagcagtggacatgtttattggcttacctgtttctt--tcag----
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CTATCCAGCTTGGGGTTATGGATTGAGATATAAGTATGGTTTATTTAAACAGCGAATAACCAAAGATGGGCAGGAGGAAGTTGCTGAAGATTGGCTTGAGgtatgtttaattatttattgacaagtgctattggcatgtacttaaaaattaaaattataatgtttgcatcaacaccaaaatctttcagttctgttaatatttctttctttgcttgtgacctcgtcaaacag
upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G06040.1 (Glycine max), 5'ss of exon 4
TTATCCGGCTTGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATTACAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGgtcttattctcttattcttttctcatac-agcgtttgctattgaacagtatttcctaatttgtactctcttgtagcaatg---ctgagcagtggacatgtttattggcttacctgt---ttctttcag---
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CTATCCAGCTTGGGGTTATGGATTGAGATATAAGTATGGCTTATTTAAACAGCGAATAACCAAAGATGGGCAGGAGGAAGTTGCTGATGATTGGCTTGAGgtatgtttcattatttgttggcaagtgctagtggcatgtacttaaaaattaaaattataatgtttgcaccaacaccaaagtctttcagttctgttaatatttctttctttgcttgtgatctcgtctaacag
upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0108g01560.t01 (Vitis vinifera), 5'ss of exon 4
TTATCCGGCTTGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATTACAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGgtcttatt--ctcttattctttt---ctcatacagcgtttgctattgaaca-gtatttcctaat---ttgtactctcttgtagcaa---tgctgagcagtggaca-tgtt----tattggcttacctgtttctttcag------------------------------------------------------
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TTACCCAGCATGGGGTTATGGACTCAGATATAAGTATGGCTTATTTAAACAGCATATTACAAAAGATGGCCAAGAGGAAGTTGCTGAAGATTGGCTTGAGgtattcttgctttttgttcatttattttcattttaagtacttccttgtgtatgtgtttaaaaataaatggtcctttcagttattaaatttccagaaacataattagtgttctgttggtagcgaaattatttctttaagtttcataatggaaagcctcattatctgttggttaagtacagtttctctttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125016697|gb|EL088966.1|EL088966EST: AGAGAATTACAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAG CTAAGCAATCCTTGGGAAATAGTCAGAAATGATGTCTCATA
genomic: AGAGAATTACAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGgtcttattct ... tttctttcagCTAAGCAATCCTTGGGAAATAGTCAGAAATGATGTCTCATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATCCGGCTTGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATTACAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGgtcttattctcttattcttttctcatacagcgtttgctattgaacagtatttcctaatttgtactctcttgtagcaatgctgagcagtggacatgtttattggcttacctgtttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG