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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcattctaatacttgctttctaataagaattagggtacggaatttgaattttatagtgaatgttgtgaagtaactgattcgtattccttgggattttgtttttgtgttgattgattttcagAAGTGTTTATTAGCTCGATGAATCCGTTTGCGCCAGATGCTGCTTCGGTAGCTTCGAGTATCAAGTACCACGCGGAGTTTACGCCATTGTTTTCACCGGA

Basic information

species Arabidopsis thaliana
transcript AT3G29320.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124917337|gb|EH991211.1|EH991211
EST:     TAACCGACGCAGTTCTCGATTCCGAACAAG                         AAGTGTTTATTAGCTCGATGAATCCGTTTGCGCCAGATGCTGCTTCGGTAG
genomic: TAACCGACGCAGTTCTCGATTCCGAACAAGgtctcattct ... tgattttcagAAGTGTTTATTAGCTCGATGAATCCGTTTGCGCCAGATGCTGCTTCGGTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtaactgattcgtattccttgggattttgtttttgtgttgattgattttcagAAGTGTTTATTAGCTCGATGAATCCGTTTGCGCCAGATGCTGCTTCGGTAGCTTCGAGTATCAAGTACCACGCGGAGTTTACGCCATTGTTTTCACCGGA
                                                ttttc  CT-rich tract
                          attttgttttt  TA-rich tract