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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAGAGATGCTTTGATCATGAATTGGAATGCAACTTATGAGTATTACAACAGAGTGAATGTGAAACAAGCGTATTATTTGTCAATGGAGTTTTTGCAGgttttggtttttactcatttctttgagtgattttgttcttggttgttatctaactattttacattgtag

Basic information

species Arabidopsis thaliana
transcript AT3G29320.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g55090.1 (Oryza sativa), 5'ss of exon 2
TGTTAGAGATGCTTTGATCATGAATTGGAATGCAACTTATGAGTATTACAACAGAGTGAATGTGAAACAAGCGTATTATTTGTCAATGGAGTTTTTGCAGgttt----tggtttttactca------------tttctttgagtgattttgttcttggttgttatctaactattttacattgtag
||||   ||| || |||| ||||| ||||||||||| ||||| |||||| |||||   |||||||| |||||||||||  |||| ||||||||||| ||||| |    || |  || ||||            |  |||| ||||| |   ||     || ||   |   | ||||  |||||||
TGTTCTTGATACTCTGATAATGAACTGGAATGCAACATATGACTATTACGACAGAACAAATGTGAAGCAAGCGTATTACCTGTCCATGGAGTTTTTACAGgtctcatatgctgcttcctcaagcctcatctattacctttcagtgaatacattgcatcttatttggttgttcttttgtattgtag

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G074158_T02 (Zea mays), 5'ss of exon 2
TGTTAGAGATGCTTTGATCATGAATTGGAATGCAACTTATGAGTATTACAACAGAGTGAATGTGAAACAAGCGTATTATTTGTCAATGGAGTTTTTGCAGgt--tttggtttttactcatttctttgagtgattttgttcttggttgttatctaactattttacattgtag--------------------
|||    |||||  || | || || |||||||| || ||||| |||||||||| | ||||||| |||||||| |||||  |||| ||||||||||| |||||         ||   ||  |    | | |  |  | || ||| |  ||   |   ||| |||  | |||                     
TGTCCTTGATGCGCTGCTGATAAACTGGAATGCGACATATGATTATTACAACAAAATGAATGTAAAACAAGCATATTACCTGTCCATGGAGTTTTTACAGgtgacacaaccttctttctctaacctcactattcatatt-ttgctaattgagtccttatgttaattggtaattgctgttttctatgtttag

upper sequence: AT3G29320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv14s0108g01560.t01 (Vitis vinifera), 5'ss of exon 2
TGTTAGAGATGCTTTGATCATGAATTGGAATGCAACTTATGAGTATTACAACAGAGTGAATGTGAAACAAGCGTATTATTTGTCAATGGAGTTTTTGCAGgttt----tggtttttactcatttctt-tgagtgatt-----ttgttcttggttgttatctaactattttacattgtag-------------------------
|||| | |||||  | ||||| || |||||||| || ||||| ||  |  | |   |||| || || || || ||||||||||||||||| |||||||||||||    || || || ||  ||  || | ||           |||| ||| || |  | |   |     | ||||  |                         
TGTTCGCGATGCACTCATCATAAACTGGAATGCTACATATGATTACCATGAAAAGATGAACGTAAAGCAGGCATATTATTTGTCAATGGAATTTTTGCAGgtttggcatgtttcttccttgttgtttattagaagccacaagctgtttttgattttagtttgcatgcaagatattgccgtttcaacgtgttgtattttttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125253304|gb|EL267389.1|EL267389
EST:     TTATTTGTCAATGGAGTTTTTGCAG                         GGTAGAGCCTTATCGAATGCCGTGGGTAACCTTGGGCTTAATAGCGCTTAT
genomic: TTATTTGTCAATGGAGTTTTTGCAGgttttggttt ... tacattgtagGGTAGAGCCTTATCGAATGCCGTGGGTAACCTTGGGCTTAATAGCGCTTAT
EST: gi|125226319|gb|EL240404.1|EL240404
EST:     TATTTGTCAATGGAGTTTTTGCAG                         GGTAGAGCCTTATCGAATGCCGTGGGTAACCTTGGGCTTAATAGCGCTTAT
genomic: TATTTGTCAATGGAGTTTTTGCAGgttttggttt ... tacattgtagGGTAGAGCCTTATCGAATGCCGTGGGTAACCTTGGGCTTAATAGCGCTTAT