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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTTCTGGTCAAGTTGCTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtaccgttctcatttgattgcatcttaaaaccttgtagagttgagagatatatcatgacacattcaatctttttcatgaatcatgacacacag

Basic information

species Arabidopsis thaliana
transcript AT3G20000.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829613|gb|CK119297.1|CK119297
EST:     CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG                         GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: gi|86078167|gb|DR373924.1|DR373924
EST:     CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG                         GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: gi|86076058|gb|DR371815.1|DR371815
EST:     CTAGCACGGGTGCTATTGTTATGAACTATGTTCAGAAGATTTCAGATAAG                         GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: gi|116432713|gb|EG475305.1|EG475305
EST:     CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG                         GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: gi|124729435|gb|EH820837.1|EH820837
EST:     AAGATTTCAGATAAG                         GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
genomic: AAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: gi|164180612|gb|ES110414.1|ES110414
EST:     CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG                         GTGTCACTTGCCACTGATTTCAT
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCAT
EST: gi|124859297|gb|EH943734.1|EH943734
EST:     CACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG                         GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGT
genomic: CACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGCTTCTGGTCAAGTTGCTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtaccgttctcatttgattgcatcttaaaaccttgtagagttgagagatatatcatgacacattcaatctttttcatgaatcatgacacacag

- - - - - - - - - - - - - - - GCTGTT