1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgatgtaccgttctcatttgattgcatcttaaaaccttgtagagttgagagatatatcatgacacattcaatctttttcatgaatcatgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAG
species | Arabidopsis thaliana |
transcript | AT3G20000.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAEST: gi|86078167|gb|DR373924.1|DR373924
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAEST: gi|86076058|gb|DR371815.1|DR371815
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: CTAGCACGGGTGCTATTGTTATGAACTATGTTCAGAAGATTTCAGATAAG GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAEST: gi|116432713|gb|EG475305.1|EG475305
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAEST: gi|124729435|gb|EH820837.1|EH820837
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: AAGATTTCAGATAAG GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAEST: gi|164180612|gb|ES110414.1|ES110414
genomic: AAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACA
EST: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG GTGTCACTTGCCACTGATTTCATEST: gi|124859297|gb|EH943734.1|EH943734
genomic: CTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCAT
EST: CACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAG GTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGT
genomic: CACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGgtgatgtacc ... tgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGT
agttgagagatatatcatgacacattcaatctttttcatgaatcatgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAG
atatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgtaccgttctcatttgattgcatcttaaaaccttgtagagttgagagatatatcatgacacattcaatctttttcatgaatcatgacacacagGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG