1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacacaaatgatctgctacttagatttccgctggttcctgtattgattctcctttaaaactctggtttcgttttgttcgatccagCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGTTAAAAGACCGAATAAAAACCGGCACACAATAAGCCTGGCGCACAGAGCA
species | Arabidopsis thaliana |
transcript | AT3G20000.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAG CTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGTEST: gi|86076058|gb|DR371815.1|DR371815
genomic: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAGgtacacaaat ... ttcgatccagCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGT
EST: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAG CTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGTEST: gi|116432713|gb|EG475305.1|EG475305
genomic: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAGgtacacaaat ... ttcgatccagCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGT
EST: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAG CTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGTEST: gi|116484293|gb|EG526885.1|EG526885
genomic: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAGgtacacaaat ... ttcgatccagCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGT
EST: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAG CTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGTEST: gi|116484294|gb|EG526886.1|EG526886
genomic: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAGgtacacaaat ... ttcgatccagCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGT
EST: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAG CTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGT
genomic: TCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAGgtacacaaat ... ttcgatccagCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGT
ctggttcctgtattgattctcctttaaaactctggtttcgttttgttcgatccagCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGTTAAAAGACCGAATAAAAACCGGCACACAATAAGCCTGGCGCACAGAGCA
tattgat putative branch site (score: 3)
ttttgttc putative PPT
tttaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacaaatgatctgctacttagatttccgctggttcctgtattgattctcctttaaaactctggtttcgttttgttcgatccagCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGTTAAAAGACCGAATAAAAACCGGCACACAATAAGCCTGGCGCACAGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA