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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagcttgtatttatagttattgttgtaccatctatttatttgtggtcttcgctaagcatgtgtactgatggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTATCAAAATTCCAACAGCCCATTATGAGTTTGGTGCCAATTATTATGACCCA

Basic information

species Arabidopsis thaliana
transcript AT3G20000.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164233359|gb|EL988287.1|EL988287
EST:     CTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035196|gb|DR330949.1|DR330949
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAT                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035200|gb|DR330953.1|DR330953
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAT                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035193|gb|DR330946.1|DR330946
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035214|gb|DR330967.1|DR330967
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035211|gb|DR330964.1|DR330964
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035191|gb|DR330944.1|DR330944
EST:     CGCTTCGACTTTACCARGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAAGTTCCTGCTCARTCAMCTGAAACTACTA
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAA-GTTCCTGCTCAGTCACCTGAAACTACTA
EST: gi|86035194|gb|DR330947.1|DR330947
EST:     GCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCKHCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTA
genomic: GCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCT-CAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTA
EST: gi|86035209|gb|DR330962.1|DR330962
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|47829613|gb|CK119297.1|CK119297
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035198|gb|DR330951.1|DR330951
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035210|gb|DR330963.1|DR330963
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035192|gb|DR330945.1|DR330945
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035212|gb|DR330965.1|DR330965
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCCGAAGTTCCTGCTCAGTCACCTGAAACTACTA
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACC-GAAGTTCCTGCTCAGTCACCTGAAACTACTA
EST: gi|86035204|gb|DR330957.1|DR330957
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035188|gb|DR330941.1|DR330941
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGGTCACCTGAAACTACTA
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAG-TCACCTGAAACTACTA
EST: gi|86035208|gb|DR330961.1|DR330961
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035195|gb|DR330948.1|DR330948
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035187|gb|DR330940.1|DR330940
EST:     GCTTCGACTTTACCCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: GCTTCGACTTTA-CCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035206|gb|DR330959.1|DR330959
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035197|gb|DR330950.1|DR330950
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035189|gb|DR330942.1|DR330942
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035207|gb|DR330960.1|DR330960
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035215|gb|DR330968.1|DR330968
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035213|gb|DR330966.1|DR330966
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035190|gb|DR330943.1|DR330943
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035202|gb|DR330955.1|DR330955
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGNAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035199|gb|DR330952.1|DR330952
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035201|gb|DR330954.1|DR330954
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035216|gb|DR330969.1|DR330969
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
EST: gi|86035205|gb|DR330958.1|DR330958
EST:     CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAG                         TGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT
genomic: CGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGgtatgtagct ... ggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaccatctatttatttgtggtcttcgctaagcatgtgtactgatggttaaacagTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTATCAAAATTCCAACAGCCCATTATGAGTTTGGTGCCAATTATTATGACCCA
                                      tactgat  putative branch site (score: 2)
     atctatttatttgt  TA-rich tract