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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactctcgagtataataatatcatcaaggcatgttctatcatatttgttacttctgatacaattttgtttcccaaaatcagGATCGTCATAACAAGGCCATATCTAAGGACACATGGGCACAGCTACTGGAATTTTCAAGG

Basic information

species Arabidopsis thaliana
transcript AT3G12760.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125025140|gb|EL097409.1|EL097409
EST:     TTGCAGAAAGAGAGTGGCCTTTGGTAACTCACTGGTGTGATTTCTTGCAG                         GATCGTCATAACAAGGCCATATCTAAGGACACATGGGCACAG
genomic: TTGCAGAAAGAGAGTGGCCTTTGGTAACTCACTGGTGTGATTTCTTGCAGgtaaactctc ... ccaaaatcagGATCGTCATAACAAGGCCATATCTAAGGACACATGGGCACAG
EST: gi|86078707|gb|DR374464.1|DR374464
EST:     TTGCAGAAAGAGAGTGGCCTTTGGTAACTCACTGGTGTGATTTCTTGCAG                         GATCGTCATAACAAGGCCATATCTAAGGACACATGGGCACAGCTACTGGAA
genomic: TTGCAGAAAGAGAGTGGCCTTTGGTAACTCACTGGTGTGATTTCTTGCAGgtaaactctc ... ccaaaatcagGATCGTCATAACAAGGCCATATCTAAGGACACATGGGCACAGCTACTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcatgttctatcatatttgttacttctgatacaattttgtttcccaaaatcagGATCGTCATAACAAGGCCATATCTAAGGACACATGGGCACAGCTACTGGAATTTTCAAGG
                         ttctgat  putative branch site (score: 3)
                                    ttttgtttccc  putative PPT
          tatcatatttgtta  TA-rich tract