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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGAGAGATAGTAAACATCGAACGTCTTCCATTTCATCTTCCTTCGATTACCTTGTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATGgtacgcgctttctccttctcctccttttgtttttttccctctgctttaggtttgcggatcctcttatggcgtctttgcttttctgattcttagagtttcattttaagtcgagtagaaaacgaacaaggctccttaattttgcgatttcagtgattgtcgacatctttgttaatcatatgattggttttgttttctgtag

Basic information

species Arabidopsis thaliana
transcript AT3G12760.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125011172|gb|EL083441.1|EL083441
EST:     CTGGATTCTTCTTCACTATG                         CATAAGTTGAGCAGAAGCAACCGTGACAAAACTTCAGCAGTTCGTGGCTAT
genomic: CTGGATTCTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAA-CTTCAGCAGTTCGTGGCTAT
EST: gi|125255787|gb|EL269872.1|EL269872
EST:     CTTCTTCACTATG                         CATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATC
genomic: CTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATC
EST: gi|124744958|gb|EH836120.1|EH836120
EST:     CTGGATTCTTCTTCACTATG                         CATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATC
genomic: CTGGATTCTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATC
EST: gi|163986415|gb|ES195719.1|ES195719
EST:     TACCTTGTTAGGGTTTTGTATTT-GGCTTCTGGATTCTTCTTCACTATAG                         CATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
genomic: TACCTTGTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTAT-Ggtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
EST: gi|163990519|gb|ES114093.1|ES114093
EST:     ACCTTTGTTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATG                         CATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
genomic: ACC-TTG-TTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
EST: gi|164212575|gb|ES107854.1|ES107854
EST:     TTACCTTGTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATG                         CATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
genomic: TTACCTTGTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTC